- Aphanothece castagnei (Kützing) Rabenhorst, 1865
- Aphanothece clathrata West & G.S.West, 1906 accepted as Anathece clathrata (West & G.S.West) Komárek, Kastovsky & Jezberová, 2011
- Aphanothece elabens (Brébisson ex Meneghini) Elenkin, 1938
- Aphanothece nidulans Richter, 1884
- Aphanothece pallida (Kützing) Rabenhorst, 1863
- Aphanothece prasina A.Braun, 1863 accepted as Aphanothece stagnina (Sprengel) A.Braun, 1863
- Aphanothece saxicola Nägeli, 1849
- Aphanothece stagnina (Sprengel) A.Braun, 1863
