1. Species Bothriocephalus andresi Porta, 1911
2. Species Bothriocephalus antarcticus Wojciechowska, Pisano & Zdzitowiecki, 1995
3. Species Bothriocephalus apogonis Yamaguti, 1952
4. Species Bothriocephalus atherinae Chernyshenko, 1949
5. Species Bothriocephalus australis Kuchta, Scholz & Justine, 2009
6. Species Bothriocephalus barbatus Renaud Gabrion & Pasteur, 1983
7. Species Bothriocephalus bengalensis Devi, 1975
8. Species Bothriocephalus branchiostegi Yamaguti, 1952
9. Species Bothriocephalus brotulae Yamaguti, 1952
10. Species Bothriocephalus carangis Yamaguti, 1968
11. Species Bothriocephalus celineae Kuchta, Scholz & Justine, 2009
12. Species Bothriocephalus cepolae Rudolphi, 1819
13. Species Bothriocephalus clavibothrium Ariola, 1899
14. Species Bothriocephalus euryciensis Schaeffer & Self, 1978
15. Species Bothriocephalus formosus Mueller & Van Cleave, 1932
16. Species Bothriocephalus gadellus Blend & Dronen, 2003
17. Species Bothriocephalus japonicus Yamaguti, 1934
18. Species Bothriocephalus kerguelensis Prudhoe, 1969
19. Species Bothriocephalus lateolabracis Yamaguti, 1952
20. Species Bothriocephalus macrophallus Linstow, 1905
21. Species Bothriocephalus manubriformis (Linton, 1889) Ariola, 1900
22. Species Bothriocephalus monticelli Ariola, 1899
23. Species Bothriocephalus nigropunctatus Linstow, 1901
24. Species Bothriocephalus occidentalis (Linton, 1897) Lühe, 1899
25. Species Bothriocephalus pearsei Scholz, Vargas-Vázquez & Moravec, 1996
26. Species Bothriocephalus rarus Thomas, 1937
27. Species Bothriocephalus sciaenae Yamaguti, 1934
28. Species Bothriocephalus scorpii (Müller, 1776) Cooper, 1917
29. Species Bothriocephalus tetragonus Ariola, 1899
30. Species Bothriocephalus timii Gil de Pertierra, Arredondo & Incorvaia, 2015
31. Species Bothriocephalus trachypteri Ariola, 1896
32. Species Bothriocephalus trachypteriiris Ariola, 1896
33. Species Bothriocephalus travassosi Tubangui, 1938
34. Species Bothriocephalus typhlotritonis Reeves, 1949
35. Species Bothriocephalus vallei Stossich, 1899
36. Subgenus Bothriocephalus (Clestobothrium) Lühe, 1899 accepted as Clestobothrium Lühe, 1899
    1. Species Bothriocephalus (Clestobothrium) kivuensis Baer & Fain, 1958 accepted as Clestobothrium kivuense Baer & Fain, 1958 accepted as Bothriocephalus acheilognathi Yamaguti, 1934 accepted as Schyzocotyle acheilognathi (Yamaguti, 1934) Brabec, Waeschenbach, Scholz, Littlewood & Kuchta, 2015 (unaccepted > junior subjective synonym)
37. Species Bothriocephalus abyssmus Thomas, 1953 accepted as Andycestus abyssmus (Thomas, 1953) Kuchta, Scholz & Bray, 2008 (synonym)
38. Species Bothriocephalus acheilognathi Yamaguti, 1934 accepted as Schyzocotyle acheilognathi (Yamaguti, 1934) Brabec, Waeschenbach, Scholz, Littlewood & Kuchta, 2015 (Superseded combination)
39. Species Bothriocephalus aegyptiacus Ryšavý & Moravec, 1975 accepted as Bothriocephalus acheilognathi Yamaguti, 1934 accepted as Schyzocotyle acheilognathi (Yamaguti, 1934) Brabec, Waeschenbach, Scholz, Littlewood & Kuchta, 2015 (unaccepted > junior subjective synonym)
40. Species Bothriocephalus affinis (Leuckart, 1819) accepted as Bothriocephalus angustatus Rudolphi, 1819 (synonym)
41. Species Bothriocephalus antarcticus Baird, 1853 accepted as Glandicephalus antarcticus (Baird, 1853) Fuhrmann, 1921 (unaccepted > superseded combination)
42. Species Bothriocephalus auriculatus Rudolphi, 1819 accepted as Anthobothrium auriculatum (Rudolphi, 1819) (superseded combination)
43. Species Bothriocephalus barbus Fahmy, Mandour & El-Naffar, 1978 accepted as Bothriocephalus acheilognathi Yamaguti, 1934 accepted as Schyzocotyle acheilognathi (Yamaguti, 1934) Brabec, Waeschenbach, Scholz, Littlewood & Kuchta, 2015 (unaccepted > junior subjective synonym)
44. Species Bothriocephalus belones Dujardin, 1845 accepted as Ptychobothrium belones (Dujardin, 1845) Lönnberg, 1889 (superseded combination)
45. Species Bothriocephalus bicolor Bartels in von Nordmann, 1832 accepted as Tentacularia bicolor (Bartels in von Nordmann, 1832) accepted as Tentacularia coryphaenae Bosc, 1802 (unaccepted > superseded combination)
46. Species Bothriocephalus bifurcatus Leuckart, 1819 accepted as Acanthobothrium bifurcatum (Leuckart, 1819) (superseded combination)
47. Species Bothriocephalus bipunctatus (Zeder, 1800) accepted as Bothriocephalus scorpii (Müller, 1776) Cooper, 1917 (synonym)
48. Species Bothriocephalus callariae Linstow, 1878 accepted as Abothrium gadi Van Beneden, 1870 (unaccepted > junior subjective synonym)
49. Species Bothriocephalus centrolophipompili (Wagener, 1854) accepted as Bothriocotyle solinosomum Ariola, 1900 (synonym)
50. Species Bothriocephalus cestus Leidy, 1885 accepted as Eubothrium salvelini (Schrank, 1790) Nybelin, 1922 (synonym)
51. Species Bothriocephalus claviceps (Goeze, 1782) Rudolphi, 1810 accepted as Bothriocestus claviceps (Goeze, 1782) Scholz, Choudhury & Reyda, 2023 (unaccepted > superseded combination)
52. Species Bothriocephalus cordatus Leuckart, 1863 accepted as Dibothriocephalus cordatus (Leuckart, 1863) Lühe, 1899 accepted as Diphyllobothrium cordatum (Leuckart, 1863) Gedoelst, 1911 (unaccepted > superseded combination)
53. Species Bothriocephalus coronatus Rudolphi, 1819 accepted as Acanthobothrium coronatum (Rudolphi, 1819) Blanchard, 1848 (unaccepted > superseded combination)
54. Species Bothriocephalus crassiceps Rudolphi, 1819 accepted as Clestobothrium crassiceps (Rudolphi, 1819) Lühe, 1899 (superseded combination)
55. Species Bothriocephalus cristatus Davaine, 1873 accepted as Dibothriocephalus cristatus (Davaine, 1873) Lühe, 1899 (unaccepted > superseded combination)
56. Species Bothriocephalus cuspidatus Cooper, 1917 accepted as Bothriocestus cuspidatus (Cooper, 1917) Scholz, Choudhury & Reyda, 2023 (unaccepted > superseded combination)
57. Species Bothriocephalus dendriticus Nitzsch, 1824 accepted as Dibothriocephalus dendriticus (Nitzsch, 1824) Lühe, 1899 (unaccepted > superseded combination)
58. Species Bothriocephalus ditremus Creplin, 1825 accepted as Dibothriocephalus ditremus (Creplin, 1825) Lühe, 1899 (unaccepted > superseded combination)
59. Species Bothriocephalus echeneis Leuckart, 1819 accepted as Echeneibothrium tumidulum (Rudolphi, 1819)
60. Species Bothriocephalus elegans Krabbe, 1865 accepted as Diphyllobothrium elegans (Krabbe, 1865) Meggitt, 1924 (unaccepted > superseded combination)
61. Species Bothriocephalus ellipticus Linstow, 1880 accepted as Abothrium gadi Van Beneden, 1870 (unaccepted > junior subjective synonym)
62. Species Bothriocephalus felis Creplin, 1825 accepted as Dibothriocephalus felis (Creplin, 1825) Lühe, 1899 (unaccepted > superseded combination)
63. Species Bothriocephalus fluviatilis Yamaguti, 1952 accepted as Schyzocotyle acheilognathi (Yamaguti, 1934) Brabec, Waeschenbach, Scholz, Littlewood & Kuchta, 2015 (unaccepted > junior subjective synonym)
64. Species Bothriocephalus funiculus Renaud & Gabrion, 1984 (unaccepted > nomen nudum)
65. Species Bothriocephalus fuscus Krabbe, 1865 accepted as Dibothriocephalus fuscus (Krabbe, 1865) Lühe, 1899 (unaccepted > superseded combination)
66. Species Bothriocephalus gadi (van Beneden, 1871) accepted as Abothrium gadi Van Beneden, 1870 (unaccepted > superseded combination)
67. Species Bothriocephalus ganapattii Rao, 1954 accepted as Penetrocephalus ganapattii (Rao, 1954) Rao, 1960 (synonym)
68. Species Bothriocephalus gowkongensis Yeh, 1955 accepted as Schyzocotyle acheilognathi (Yamaguti, 1934) Brabec, Waeschenbach, Scholz, Littlewood & Kuchta, 2015 (unaccepted > junior subjective synonym)
69. Species Bothriocephalus gregarius Renaud Gabrion & Pasteur, 1983 (unaccepted > nomen nudum)
70. Species Bothriocephalus histiophorus Shipley, 1909 accepted as Bothriocephalus manubriformis (Linton, 1889) Ariola, 1900 (synonym)
71. Species Bothriocephalus indicus Ganapati & Rao, 1955 accepted as Oncodiscus sauridae Yamaguti, 1934 (synonym)
72. Species Bothriocephalus infundibuliformis Rudolphi, 1810 accepted as Abothrium infundibuliformis (Rudolphi, 1810) Braun, 1900 accepted as Eubothrium salvelini (Schrank, 1790) Nybelin, 1922 (unaccepted > superseded combination)
73. Species Bothriocephalus janickii Markowski, 1971 accepted as Plicocestus janickii (Markowski, 1971) (synonym)
74. Species Bothriocephalus kivuensis Baer & Fain, 1958 accepted as Schyzocotyle acheilognathi (Yamaguti, 1934) Brabec, Waeschenbach, Scholz, Littlewood & Kuchta, 2015 (unaccepted > junior subjective synonym)
75. Species Bothriocephalus kupermani Choudhury, Scholz & Beuchel, 2022 accepted as Bothriocestus kupermani (Choudhury, Scholz & Beuchel, 2022) Scholz, Choudhury & Reyda, 2023 (unaccepted > superseded combination)
76. Species Bothriocephalus laciniatus (Linton, 1897) accepted as Bothriocephalus manubriformis (Linton, 1889) Ariola, 1900 (synonym)
77. Species Bothriocephalus lanceolatus Krabbe, 1865 accepted as Dibothriocephalus lanceolatus (Krabbe, 1865) Zschokke, 1903 accepted as Diphyllobothrium lanceolatum (Krabbe, 1865) Cooper, 1921 (Superseded combination)
78. Species Bothriocephalus lanceolatus Linstow, 1878 nec Krabbe, 1865 accepted as Abothrium gadi Van Beneden, 1870 (unaccepted > junior subjective synonym)
79. Species Bothriocephalus loennbergi Ariola, 1895 accepted as Echinophallus loennbergi (Ariola, 1895) accepted as Echinophallus peltocephalus (Monticelli, 1893) Kuchta & Scholz, 2007 (unaccepted > superseded combination)
80. Species Bothriocephalus lonchinobothrium Monticelli, 1899 accepted as Echinophallus lonchinobothrium (Monticelli, 1890) Kuchta & Scholz, 2007 (superseded combination)
81. Species Bothriocephalus longispiculus Stossich, 1895 accepted as Acoleus longispiculus (Stossich, 1895)
82. Species Bothriocephalus macrocephalus Rudolphi, 1810 accepted as Tetrabothrius (Tetrabothrius) macrocephalus (Rudolphi, 1808) Rudolphi, 1819 (unaccepted > superseded combination)
83. Species Bothriocephalus marginatus Krefft, 18711 accepted as Spirometra mansoni (Cobbold, 1883) Faust, Campbell & Kellogg, 1929 (unaccepted > junior subjective synonym)
84. Species Bothriocephalus microcephalus Rudolphi, 1819 accepted as Anchistrocephalus microcephalus (Rudolphi, 1819) (superseded combination)
85. Species Bothriocephalus monorchis Linstow, 1903 accepted as Anchistrocephalus microcephalus (Rudolphi, 1819) (synonym)
86. Species Bothriocephalus neglectus Loennberg, 1893 accepted as Clestobothrium neglectum (Lönnberg, 1893) Dronen & Blend, 2003 (superseded combination)
87. Species Bothriocephalus opsariichthydis Yamaguti, 1934 accepted as Schyzocotyle acheilognathi (Yamaguti, 1934) Brabec, Waeschenbach, Scholz, Littlewood & Kuchta, 2015 (unaccepted > junior subjective synonym)
88. Species Bothriocephalus peltocephalus Monticelli, 1893 accepted as Echinophallus peltocephalus (Monticelli, 1893) Kuchta & Scholz, 2007 (superseded combination)
89. Species Bothriocephalus penetratus Subhapradha, 1955 accepted as Penetrocephalus ganapattii (Rao, 1954) Rao, 1960 (synonym)
90. Species Bothriocephalus pilula Leuckart, 1819 accepted as Clestobothrium crassiceps (Rudolphi, 1819) Lühe, 1899 (synonym)
91. Species Bothriocephalus platycephalus Monticelli, 1889 accepted as Australicola platycephalus (Monticelli, 1889) Kuchta & Scholz, 2007 (unaccepted > superseded combination)
92. Species Bothriocephalus plicatus Rudolphi, 1819 accepted as Fistulicola plicatus (Rudolphi, 1819) Lühe, 1899 (unaccepted > superseded combination)
93. Species Bothriocephalus proboscideus (Batsch, 1786) accepted as Eubothrium crassum (Bloch, 1779) Nybelin, 1922 (unaccepted > junior subjective synonym)
94. Species Bothriocephalus prudhoei Tadros, 1967 accepted as Kirstenella gordoni (Woodland, 1937) Kuchta in Kuchta, Burianova, Jirku, de Chambrier, Oros, Brabec & Scholz, 2012 (unaccepted > junior subjective synonym)
95. Species Bothriocephalus punctatus (Rudolphi, 1802) accepted as Bothriocephalus scorpii (Müller, 1776) Cooper, 1917 (synonym)
96. Species Bothriocephalus pycnomerus Woodland, 1924 accepted as Senga pycnomera (Woodland, 1924) Dollfus, 1934 (superseded combination)
97. Species Bothriocephalus quadratus Linstow, 1892 accepted as Diphyllobothrium quadratum (Linstow, 1892) Railliet & Henry, 1912 (synonym)
98. Species Bothriocephalus rhombi Mola, 1928 accepted as Bothriocephalus scorpii (Müller, 1776) Cooper, 1917 (synonym)
99. Species Bothriocephalus ruficollis Eysenhardt, 1829 accepted as Eutetrarhynchus ruficollis (Eysenhardt, 1829) Pintner, 1913 (unaccepted > superseded combination)
100. Species Bothriocephalus sagittatus Leuckart, 1820 accepted as Anchistrocephalus microcephalus (Rudolphi, 1819) (synonym)
101. Species Bothriocephalus schistochilus Germanos, 1895 accepted as Diphyllobothrium schistochilus (Germanos, 1895) Cooper, 1921 (unaccepted > superseded combination)
102. Species Bothriocephalus sphaerocephalus Deslongchamps, 1824 accepted as Echeneibothrium sphaerocephalum (Deslongchamps, 1824) (superseded combination)
103. Species Bothriocephalus suecius Lönnberg, 1889 accepted as Eubothrium crassum (Bloch, 1779) Nybelin, 1922 (unaccepted > junior subjective synonym)
104. Species Bothriocephalus tectus Linstow, 1892 accepted as Baylisiella tecta (Linstow, 1892) (synonym)
105. Species Bothriocephalus teleostei Malhotra, 1984 accepted as Schyzocotyle nayarensis (Malhotra, 1983) Brabec, Waeschenbach, Scholz, Littlewood & Kuchta, 2015 (unaccepted > junior subjective synonym)
106. Species Bothriocephalus tetrapterus von Siebold, 1848 accepted as Diplogonoporus tetrapterus (von Siebold, 1848) Ariola, 1896 accepted as Diphyllobothrium tetrapterum (von Siebold, 1848)
107. Species Bothriocephalus truncatus Leuckart, 1819 accepted as Fistulicola plicatus (Rudolphi, 1819) Lühe, 1899 (synonym)
108. Species Bothriocephalus tumidulus Rudolphi, 1819 accepted as Echeneibothrium tumidulum (Rudolphi, 1819) (superseded combination)
109. Species Bothriocephalus uncinatus Rudolphi, 1819 accepted as Onchobothrium uncinatum (Rudolphi, 1819) accepted as Acanthobothrium uncinatum (Rudolphi, 1819) (superseded combination)
110. Species Bothriocephalus verticillatus Rudolphi, 1819 accepted as Calliobothrium verticillatum (Rudolphi, 1819) (superseded combination)
111. Species Bothriocephalus wageneri Monticelli, 1890 accepted as Echinophallus wageneri (Monticelli, 1890) Schumacher, 1914 (superseded combination)
112. Species Bothriocephalus alessandrinii Condorelli-Francaviglia, 1898 (uncertain > taxon inquirendum)
113. Species Bothriocephalus angustatus Rudolphi, 1819 (uncertain > taxon inquirendum)
114. Species Bothriocephalus angusticeps Olsson, 1868 (uncertain > taxon inquirendum)
115. Species Bothriocephalus bramae Ariola, 1899 (uncertain > taxon inquirendum)
116. Species Bothriocephalus breviceps Guiart, 1935 (uncertain > taxon inquirendum)
117. Species Bothriocephalus capillicollis Mégnin, 1883 (uncertain > taxon inquirendum)
118. Species Bothriocephalus didelphidis Ariola, 1900 (uncertain)
119. Species Bothriocephalus hirondellei Guiart, 1935 (uncertain > taxon inquirendum)
120. Species Bothriocephalus labracis Dujardin, 1845 (uncertain > taxon inquirendum)
121. Species Bothriocephalus levinseni Ariola, 1899 (uncertain > taxon inquirendum)
122. Species Bothriocephalus liguloides Leuckart, 1886 (uncertain)
123. Species Bothriocephalus longicollis Parodi & Widakowich, 1917 (uncertain > taxon inquirendum)
124. Species Bothriocephalus lophii Rudolphi, 1819 (uncertain > taxon inquirendum)
125. Species Bothriocephalus macrobothrium Monticelli, 1889 (uncertain > taxon inquirendum)
126. Species Bothriocephalus maculatus Leuckart, 1848 (uncertain > taxon inquirendum)
127. Species Bothriocephalus minutus Ariola, 1896 (uncertain > taxon inquirendum)
128. Species Bothriocephalus motellae Olsson, 1893 (uncertain > taxon inquirendum)
129. Species Bothriocephalus palumbi Monticelli, 1889 (uncertain > taxon inquirendum)
130. Species Bothriocephalus parvus Creplin, 1846 (uncertain > taxon inquirendum)
131. Species Bothriocephalus ratticola von Linstow, 1904 (uncertain)
132. Species Bothriocephalus sauridae Ariola, 1900 (uncertain > taxon inquirendum)
133. Species Bothriocephalus spinachidae Olsson, 1863 (uncertain > taxon inquirendum)
134. Species Bothriocephalus squali Ariola, 1900 (uncertain > taxon inquirendum)
135. Species Bothriocephalus tintinnabulus Guiart, 1935 (uncertain > taxon inquirendum)

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